LUCA MASSIMINO

SINGLE-CELL AND SPATIAL REFERENCES

Seurat Repository.

Single-cell and spatial references, ready for your next analysis.

Single-cell and spatial Seurat objects in RDS format, organized by species and tissue.

52HOSTED RDS FILES
347.85 GB · RDS

REPOSITORY OVERVIEW

Files by folder

Live count of hosted RDS files, grouped by the directory structure.

52RDS files hosted

Each level groups the same files. Select a folder to filter the catalog.

Sign in to download

Available to anyone with a Google account. Your name, email, visits and download requests are recorded by Luca Massimino.

Read the privacy notice

Reference catalog

HumandLGNsnRNA-seq

Human dLGN

Bakken et al., 2021 eLife

RDS0.06 GBGoogle sign-in required
File details & integrity
File
Bakken2021_human_dLGN_GSE182211.rds
Size
62,781,597 bytes
SHA-256
e8c2a965532ef40959d68a9d3243e30f0c225be46b99401b38cdf8918f8b85b5

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Bakken2021_human_dLGN_GSE182211.rds"). Allow sufficient memory for the object.

HumanStriatumsnRNA-seq

Human striatum · BICAN

Burger et al., 2026 bioRxiv preprint

RDS28.31 GBGoogle sign-in required
File details & integrity
File
Burger2026_human_striatum_BICAN_NeMO.rds
Size
28,314,059,032 bytes
SHA-256
1241458fcfd37c791e67b8be223fd89462d61144e7f524adad6a6f75e3b7fd2d

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Burger2026_human_striatum_BICAN_NeMO.rds"). Allow sufficient memory for the object.

HumanStriatumsnRNA-seq

Human striatum · comparative atlas

Buyukkahraman et al., 2026 Nature Communications

RDS0.76 GBGoogle sign-in required
File details & integrity
File
Buyukkahraman2026_human_striatum_GSE293075.rds
Size
760,574,882 bytes
SHA-256
cceefe233f1666efca90d769b9d371383a2175db380b5c7ea6a9a573095b3002

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Buyukkahraman2026_human_striatum_GSE293075.rds"). Allow sufficient memory for the object.

HumanHippocampus / entorhinal cortexsnRNA-seq

Human hippocampus & entorhinal cortex

Franjic et al., 2022 Neuron

RDS1.14 GBGoogle sign-in required
File details & integrity
File
Franjic2022_human_hippocampus_entorhinal_GSE186538.rds
Size
1,142,843,869 bytes
SHA-256
26aa671f1496f44f7184c530837a089dce723326e339971a50a4b665df66fe43

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Franjic2022_human_hippocampus_entorhinal_GSE186538.rds"). Allow sufficient memory for the object.

HumanDorsal striatumsnRNA-seq

Human dorsal striatum · interneurons

Garma et al., 2024 Nature Communications

RDS1.13 GBGoogle sign-in required
File details & integrity
File
Garma2024_human_dorsal_striatum_interneurons_Figshare22340140.rds
Size
1,125,691,100 bytes
SHA-256
b13e21be5110fcdc8461ef761b8023e90ff74e1ea957188e5d3c2161ef11d50a

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Garma2024_human_dorsal_striatum_interneurons_Figshare22340140.rds"). Allow sufficient memory for the object.

HumanNeocortex10x RNA-seq

Human neocortex · 8 areas · 10x

Jorstad et al., 2023 Science

RDS59.24 GBGoogle sign-in required
File details & integrity
File
Jorstad2023_human_neocortex_8areas_10x.rds
Size
59,244,787,535 bytes
SHA-256
5edc60aa3fdf8c7a6ac309655ba028c3c88674462f3e5782a5d969df3c125143

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Jorstad2023_human_neocortex_8areas_10x.rds"). Allow sufficient memory for the object.

HumanNeocortexSMART-seq

Human neocortex · SMART-seq

Jorstad et al., 2023 Science

RDS0.94 GBGoogle sign-in required
File details & integrity
File
Jorstad2023_human_neocortex_SMARTseq.rds
Size
937,827,183 bytes
SHA-256
4b44786feeefd499259fdf366fa981a1cf79cf9d99614eacfd1e38027d1c26ea

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Jorstad2023_human_neocortex_SMARTseq.rds"). Allow sufficient memory for the object.

HumanDorsal root gangliasnRNA-seq

Human dorsal root ganglia

Jung et al., 2023 Nature Communications

RDS9.59 GBGoogle sign-in required
File details & integrity
File
Jung2023_human_DRG_GSE201586.rds
Size
9,585,239,853 bytes
SHA-256
7dcc2291f102eb142df06f6e7759b3ac6cc5df5abab709420ef26bc6922a9d3f

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Jung2023_human_DRG_GSE201586.rds"). Allow sufficient memory for the object.

HumanSubstantia nigra / caudatesnRNA-seq

Human dopamine neurons · SN / caudate

Kamath et al., 2022 Nature Neuroscience

RDS20.21 GBGoogle sign-in required
File details & integrity
File
Kamath2022_human_dopamine_SN_caudate_GSE178265.rds
Size
20,211,890,133 bytes
SHA-256
6e51947a2fd8e53c26a25f25776b2cb24a6e5055a47f54a104e053934d5383a1

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Kamath2022_human_dopamine_SN_caudate_GSE178265.rds"). Allow sufficient memory for the object.

HumanBrain · interneuronssnRNA-seq

Human interneurons

Krienen et al., 2020 Nature

RDS0.18 GBGoogle sign-in required
File details & integrity
File
Krienen2020_human_interneurons_GSE151761.rds
Size
181,493,180 bytes
SHA-256
6b9b082a2587830cb8c2055399ec09fcd5c051cc0423cf706047767454ad5951

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Krienen2020_human_interneurons_GSE151761.rds"). Allow sufficient memory for the object.

HumanRetinascRNA-seq

Human retina · HRCA · scRNA

Li et al., 2026 Nature Genetics

RDS4.20 GBGoogle sign-in required
File details & integrity
File
Li2026_HRCA_human_retina_scRNA.rds
Size
4,197,814,690 bytes
SHA-256
a15b38d8b5f0c5368dcc6c3ace641cd225f37abd4ae8d09bd8eaa53379fe439f

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Li2026_HRCA_human_retina_scRNA.rds"). Allow sufficient memory for the object.

HumanRetinasnRNA-seq

Human retina · HRCA

Li et al., 2026 Nature Genetics

RDS62.48 GBGoogle sign-in required
File details & integrity
File
Li2026_HRCA_human_retina_snRNA.rds
Size
62,478,198,217 bytes
SHA-256
e7673a905a9a6590ab582a92c1f9cbc17cd3b488ecb3150058c1c3ce84df65c2

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Li2026_HRCA_human_retina_snRNA.rds"). Allow sufficient memory for the object.

HumanSubependymal zonesnRNA-seq

Adult human subependymal zone

Puvogel et al., 2024 eNeuro

RDS0.81 GBGoogle sign-in required
File details & integrity
File
Puvogel2023_adult_human_SEZ_GSE234790.rds
Size
808,012,893 bytes
SHA-256
d6faf1c94e401901856ebf0a0a681c106c29a13368f1282d7ab003c9f7fd5a0e

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Puvogel2023_adult_human_SEZ_GSE234790.rds"). Allow sufficient memory for the object.

HumanNucleus accumbenssnRNA-seq

Human nucleus accumbens

Ravichandran et al., 2025 bioRxiv preprint

RDS11.54 GBGoogle sign-in required
File details & integrity
File
RavichandranBach2025_human_nucleus_accumbens_snRNA_GSE307587.rds
Size
11,538,951,455 bytes
SHA-256
c688a3be2673a177e193f5a2225b98867054a8cbdd3579d9385fd45d154c4a7b

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("RavichandranBach2025_human_nucleus_accumbens_snRNA_GSE307587.rds"). Allow sufficient memory for the object.

HumanMediodorsal thalamussnRNA-seq

Human mediodorsal thalamus · HBCC

Schulmann et al., 2024 bioRxiv preprint

RDS2.90 GBGoogle sign-in required
File details & integrity
File
SchulmannMandal2026_MD_HBCC_original.rds
Size
2,903,056,865 bytes
SHA-256
400ce7fa8619d03034e674867a7fd941c1d606c90bc0b5f1e74642d3c70bdbf5

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("SchulmannMandal2026_MD_HBCC_original.rds"). Allow sufficient memory for the object.

HumanMediodorsal thalamussnRNA-seq

Human mediodorsal thalamus · MSSM

Schulmann et al., 2024 bioRxiv preprint

RDS0.81 GBGoogle sign-in required
File details & integrity
File
SchulmannMandal2026_MD_MSSM_original.rds
Size
809,634,123 bytes
SHA-256
6c8341502c6c0809f355e20ea98cec7e0b958d57dca6e0d7d23ac6c2b3c1995c

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("SchulmannMandal2026_MD_MSSM_original.rds"). Allow sufficient memory for the object.

HumanCerebellumsnRNA-seq

Human cerebellum · development

Sepp et al., 2024 Nature

RDS0.88 GBGoogle sign-in required
File details & integrity
File
SeppLeiss2024_human_cerebellum_development.rds
Size
877,019,293 bytes
SHA-256
2a6e976e23f6c9fab9498c15495cc743e471a9e05fa016cb49152d3edffa12b7

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("SeppLeiss2024_human_cerebellum_development.rds"). Allow sufficient memory for the object.

HumanWhole brainsnRNA-seq

Adult human brain atlas

Siletti et al., 2023 Science

RDS30.95 GBGoogle sign-in required
File details & integrity
File
Siletti2023_adult_human_brain.rds
Size
30,950,101,674 bytes
SHA-256
c5ffa0bdd0256ba8a979b28a07b1eddbedc41ec561abfe516118b95ed7da99aa

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Siletti2023_adult_human_brain.rds"). Allow sufficient memory for the object.

HumanHypothalamussnRNA-seq

Human hypothalamus · HYPOMAP

Tadross et al., 2025 Nature

RDS6.46 GBGoogle sign-in required
File details & integrity
File
Tadross2025_HYPOMAP_human_hypothalamus_snRNA.rds
Size
6,463,103,232 bytes
SHA-256
265639fd7464294d6f526567e73969fdb2d8dcaea3d2b31f13f5fee05fa11509

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Tadross2025_HYPOMAP_human_hypothalamus_snRNA.rds"). Allow sufficient memory for the object.

HumanCerebellumsnRNA-seq

Human cerebellum · SCA1

Tejwani et al., 2024 Neuron

RDS17.60 GBGoogle sign-in required
File details & integrity
File
Tejwani2024_human_cerebellum_SCA1_GSE246183.rds
Size
17,595,854,589 bytes
SHA-256
4dfb0ffa65d69b3fd53d7dd1ee13ce4527443dd0d2d7a41ab5420b3e49625538

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Tejwani2024_human_cerebellum_SCA1_GSE246183.rds"). Allow sufficient memory for the object.

HumanAnterior hippocampussnRNA-seq

Human anterior hippocampus

Thompson et al., 2025 Nature Neuroscience

RDS2.40 GBGoogle sign-in required
File details & integrity
File
Thompson2025_human_anterior_hippocampus_snRNA_GSE264624.rds
Size
2,404,810,534 bytes
SHA-256
50f679fd6ae51d271a4f8552051770f7ade485d9327bda57b0c1449b6e7c3d9f

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Thompson2025_human_anterior_hippocampus_snRNA_GSE264624.rds"). Allow sufficient memory for the object.

HumanAmygdalasnRNA-seq

Human amygdala · cross-species atlas

Totty et al., 2025 Science Advances

RDS2.00 GBGoogle sign-in required
File details & integrity
File
Totty2025_human_amygdala_GSE281366.rds
Size
2,004,487,919 bytes
SHA-256
76458e6bb0fdcd8db3e059a2c0496e1e85307ee6a1fd13694a267b943916f86d

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Totty2025_human_amygdala_GSE281366.rds"). Allow sufficient memory for the object.

HumanLocus coeruleussnRNA-seq

Human locus coeruleus

Weber & Divecha et al., 2023 eLife

RDS1.33 GBGoogle sign-in required
File details & integrity
File
WeberDivecha2023_locus_coeruleus_snRNA.rds
Size
1,326,358,865 bytes
SHA-256
fe02fc598a8f83649b0cada9258e6ddc4b32f4307a35427e01356a9337516e5e

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("WeberDivecha2023_locus_coeruleus_snRNA.rds"). Allow sufficient memory for the object.

HumanSpinal cordsnRNA-seq

Adult human spinal cord

Yadav et al., 2023 Neuron

RDS0.28 GBGoogle sign-in required
File details & integrity
File
Yadav2023_adult_human_spinal_cord_snRNA_GSE190442.rds
Size
277,695,568 bytes
SHA-256
2969d21247803d5e857a9f53a5ad44afce6ddc7aefa1728bdbaa96ff7ac9d2f9

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yadav2023_adult_human_spinal_cord_snRNA_GSE190442.rds"). Allow sufficient memory for the object.

HumanTrigeminal ganglionsnRNA-seq

Human trigeminal ganglion

Yang et al., 2022 Neuron

RDS0.91 GBGoogle sign-in required
File details & integrity
File
Yang2022_human_trigeminal_snRNA_GSE197289.rds
Size
909,635,411 bytes
SHA-256
0f9f4104d53d15e3aee2562fb6ca7aebc596e0d4c5eff08bfb3af3763cdcae50

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yang2022_human_trigeminal_snRNA_GSE197289.rds"). Allow sufficient memory for the object.

HumanSympathetic gangliaMultiome RNA

Human sympathetic ganglia

Yang et al., 2025 bioRxiv preprint

RDS0.37 GBGoogle sign-in required
File details & integrity
File
Yang2025_human_sympathetic_ganglia_Pennsieve465.rds
Size
374,007,290 bytes
SHA-256
a1652d6ac2735726a2b040d35750e0bf2476d92b21ce51dbff4241375b66ecd2

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yang2025_human_sympathetic_ganglia_Pennsieve465.rds"). Allow sufficient memory for the object.

HumanAmygdalasnRNA-seq

Human amygdala

Yu et al., 2023 Cell Discovery

RDS12.76 GBGoogle sign-in required
File details & integrity
File
Yu2023_human_amygdala_GSE195445.rds
Size
12,755,060,735 bytes
SHA-256
cca6a3187313deeb4ba08b9bbd53630994fead703a4afafb2cc0045830a82400

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yu2023_human_amygdala_GSE195445.rds"). Allow sufficient memory for the object.

HumanDorsal root gangliaSingle-soma RNA-seq

Human dorsal root ganglia · single-soma

Yu et al., 2024 Nature Neuroscience

RDS0.47 GBGoogle sign-in required
File details & integrity
File
Yu2024_human_DRG_single_soma_GSE249746.rds
Size
469,457,222 bytes
SHA-256
8177144734d83ec0bd7de69bfed5269b6593de3bdc6c385b021a2895eb1f2b12

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yu2024_human_DRG_single_soma_GSE249746.rds"). Allow sufficient memory for the object.

HumanColon EpithelialsnATAC-seq

Human intestine · colon epithelial · multiome

Hickey et al., 2023 Nature

RDS2.15 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_colon_epithelial_author_peaks.rds
Size
2,151,904,784 bytes
SHA-256
a735e813223c35e4514e1ce8ac2b7e79cf796f96aa6efd3ba6127c5fbc9ad296

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_colon_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanDuodenum EpithelialsnATAC-seq

Human intestine · duodenum epithelial · multiome

Hickey et al., 2023 Nature

RDS0.44 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_duodenum_epithelial_author_peaks.rds
Size
443,387,019 bytes
SHA-256
3212a26a1a4062020ab9af4741b1da7a96460b088c32918efb7b2f937937ef6e

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_duodenum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanIleum EpithelialsnATAC-seq

Human intestine · ileum epithelial · multiome

Hickey et al., 2023 Nature

RDS0.36 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_ileum_epithelial_author_peaks.rds
Size
364,374,536 bytes
SHA-256
df10e6d1ace0c63f7192b48990ea9dcddd785b5f40ca4aa3680c3520025a8298

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_ileum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanImmunesnATAC-seq

Human intestine · immune · multiome

Hickey et al., 2023 Nature

RDS0.50 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_immune_author_peaks.rds
Size
503,273,417 bytes
SHA-256
a056c63c057686d2db8a9ce49c364c7f451af433a592af95fcb88cc8dfa39182

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_immune_author_peaks.rds"). Allow sufficient memory for the object.

HumanJejunum EpithelialsnATAC-seq

Human intestine · jejunum epithelial · multiome

Hickey et al., 2023 Nature

RDS1.39 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_jejunum_epithelial_author_peaks.rds
Size
1,391,261,923 bytes
SHA-256
7c4d382ad251d79b947471b7854ff993c6e291a310df987e32d41b1d603431d6

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_jejunum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanColon EpithelialsnATAC-seq

Human intestine · colon epithelial · non-multiome

Hickey et al., 2023 Nature

RDS1.52 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_colon_epithelial_author_peaks.rds
Size
1,519,513,225 bytes
SHA-256
f740b31f96f9b53ee3a1c324f5b46e11e9e33465b372e6260420753520a08adf

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_colon_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanDuodenum EpithelialsnATAC-seq

Human intestine · duodenum epithelial · non-multiome

Hickey et al., 2023 Nature

RDS0.54 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_duodenum_epithelial_author_peaks.rds
Size
535,939,495 bytes
SHA-256
a6d17466ad3c0abf7f634d61754b5994a8603ce1ec28a0b5f26e7561b28dadf7

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_duodenum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanIleum EpithelialsnATAC-seq

Human intestine · ileum epithelial · non-multiome

Hickey et al., 2023 Nature

RDS0.66 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_ileum_epithelial_author_peaks.rds
Size
656,592,960 bytes
SHA-256
b310285f3f081b27dcd60b822a97f3f7af05b4ba577b76dde5ac2cb39015444d

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_ileum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanImmunesnATAC-seq

Human intestine · immune · non-multiome

Hickey et al., 2023 Nature

RDS0.24 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_immune_author_peaks.rds
Size
239,762,304 bytes
SHA-256
240298ef94f407c434302c09b8e34c93a384825282fba32e330a067f4051fede

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_immune_author_peaks.rds"). Allow sufficient memory for the object.

HumanJejunum EpithelialsnATAC-seq

Human intestine · jejunum epithelial · non-multiome

Hickey et al., 2023 Nature

RDS0.71 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_jejunum_epithelial_author_peaks.rds
Size
706,962,133 bytes
SHA-256
431b43a3ed27cdef711d44d6770e7065c2f6761dd0a4363695f1aaf60af51a86

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_jejunum_epithelial_author_peaks.rds"). Allow sufficient memory for the object.

HumanStromalsnATAC-seq

Human intestine · stromal · non-multiome

Hickey et al., 2023 Nature

RDS0.39 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_stromal_author_peaks.rds
Size
388,478,639 bytes
SHA-256
9960b217d5a3dc0c11fe8f989b8b0a5b234cc744c721e5e4e84e5618285abcd7

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_non_multiome_stromal_author_peaks.rds"). Allow sufficient memory for the object.

HumanStromalsnATAC-seq

Human intestine · stromal · multiome

Hickey et al., 2023 Nature

RDS1.03 GBGoogle sign-in required
File details & integrity
File
Hickey2023_HuBMAP_human_intestine_snATAC_stromal_author_peaks.rds
Size
1,029,746,277 bytes
SHA-256
ea27f17acd678e9acab84d2473d0a80baf05532d086dfc979680d0a26f5a050e

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Hickey2023_HuBMAP_human_intestine_snATAC_stromal_author_peaks.rds"). Allow sufficient memory for the object.

ZebrafishIntestinescRNA-seq

Zebrafish intestine · injury and healing

Morales Castro et al., 2025 Mucosal Immunology

RDS0.15 GBGoogle sign-in required
File details & integrity
File
MoralesCastro2025_intestinal_injury_healing_scRNA.rds
Size
147,904,872 bytes
SHA-256
a328ceded943841d91ef4ee408356f20020fe83bf2d3ee51d248b1f6efaaae88

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("MoralesCastro2025_intestinal_injury_healing_scRNA.rds"). Allow sufficient memory for the object.

HumanColorectal cancerVisium HD

Human colorectal cancer · FFPE · H1-VM2JXXK A1

10x Genomics, 2025 10x Genomics

RDS6.35 GBGoogle sign-in required
File details & integrity
File
TenX2025_crc_visium_hd_ffpe_spaceranger4_H1-VM2JXXK_A1_polygon_seurat.rds
Size
6,350,315,765 bytes
SHA-256
95cb5454d108a9fb8d44d6430cbe144b2e6ad1e00188fefeb61cf74e59156c2f

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("TenX2025_crc_visium_hd_ffpe_spaceranger4_H1-VM2JXXK_A1_polygon_seurat.rds"). Allow sufficient memory for the object.

HumanColorectal cancerVisium HD

Human colorectal cancer · FFPE · 6.5 mm

10x Genomics, 2026 10x Genomics

RDS3.71 GBGoogle sign-in required
File details & integrity
File
TenX2026_colon_cancer_visium_hd_ffpe_6p5mm_spaceranger4_polygon_seurat.rds
Size
3,708,929,360 bytes
SHA-256
f8cdcc52c1ae141e25199223e229ab0df797be9bc060bbf3d727e3fdc932aede

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("TenX2026_colon_cancer_visium_hd_ffpe_6p5mm_spaceranger4_polygon_seurat.rds"). Allow sufficient memory for the object.

HumanColorectal cancerVisium HD

Human colorectal cancer · fresh frozen · 11 mm

10x Genomics, 2026 10x Genomics

RDS23.21 GBGoogle sign-in required
File details & integrity
File
TenX2026_colon_cancer_visium_hd_fresh_frozen_11mm_spaceranger4_polygon_seurat.rds
Size
23,205,586,807 bytes
SHA-256
fc1dc5441cd0322cd30c138f422ae3f892699e5842ce7073d92ca764c579fbfb

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("TenX2026_colon_cancer_visium_hd_fresh_frozen_11mm_spaceranger4_polygon_seurat.rds"). Allow sufficient memory for the object.

HumanNucleus accumbensVisium

Human nucleus accumbens · Visium

Ravichandran et al., 2025 bioRxiv preprint

RDS11.37 GBGoogle sign-in required
File details & integrity
File
RavichandranBach2025_human_nucleus_accumbens_Visium_GSE307586.rds
Size
11,368,541,513 bytes
SHA-256
b16738be1930b5ab20c7929d137eed4623772a22414a3e7525c19c31a5bf1341

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("RavichandranBach2025_human_nucleus_accumbens_Visium_GSE307586.rds"). Allow sufficient memory for the object.

HumanMediodorsal thalamusVisium

Human mediodorsal thalamus · Visium

Schulmann et al., 2024 bioRxiv preprint

RDS1.46 GBGoogle sign-in required
File details & integrity
File
SchulmannMandal2026_thalamus_Visium_original.rds
Size
1,455,722,951 bytes
SHA-256
b76fa43c9b311e81a41c16872607aa5b31fa0f50574fef10e72de3244fef8345

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("SchulmannMandal2026_thalamus_Visium_original.rds"). Allow sufficient memory for the object.

HumanHypothalamusVisium

Human hypothalamus · HYPOMAP · Visium

Tadross et al., 2025 Nature

RDS2.63 GBGoogle sign-in required
File details & integrity
File
Tadross2025_HYPOMAP_human_hypothalamus_Visium.rds
Size
2,632,769,082 bytes
SHA-256
9a49bc028cf4cfa0f89551f7f0cea6d51fb60e3c7ecd3778db25e3d4291d1cf3

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Tadross2025_HYPOMAP_human_hypothalamus_Visium.rds"). Allow sufficient memory for the object.

HumanAnterior hippocampusVisium

Human anterior hippocampus · Visium · author object

Thompson et al., 2025 Nature Neuroscience

RDS2.05 GBGoogle sign-in required
File details & integrity
File
Thompson2025_human_anterior_hippocampus_Visium_author_GSE264692.rds
Size
2,045,523,595 bytes
SHA-256
48c321a5aa398494a677e128abcc299fcf16e77fb072426e728e6b1d03bad089

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Thompson2025_human_anterior_hippocampus_Visium_author_GSE264692.rds"). Allow sufficient memory for the object.

HumanAnterior hippocampusVisium

Human anterior hippocampus · Visium

Thompson et al., 2025 Nature Neuroscience

RDS0.92 GBGoogle sign-in required
File details & integrity
File
Thompson2025_human_anterior_hippocampus_Visium_GSE264692.rds
Size
922,025,853 bytes
SHA-256
16f7e7e785b798dbee9d05feaa3a6808a3ccb419329d9147300661d23c4a2bc6

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Thompson2025_human_anterior_hippocampus_Visium_GSE264692.rds"). Allow sufficient memory for the object.

HumanLocus coeruleusVisium

Human locus coeruleus · Visium

Weber & Divecha et al., 2023 eLife

RDS1.70 GBGoogle sign-in required
File details & integrity
File
WeberDivecha2023_locus_coeruleus_Visium.rds
Size
1,704,097,301 bytes
SHA-256
63f0f2080c4abb18081de2c72327e582bb50aeb364a1d4b7ca4a32bf7dbfbfcb

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("WeberDivecha2023_locus_coeruleus_Visium.rds"). Allow sufficient memory for the object.

HumanSpinal cordVisium

Adult human spinal cord · Visium

Yadav et al., 2023 Neuron

RDS0.73 GBGoogle sign-in required
File details & integrity
File
Yadav2023_adult_human_spinal_cord_Visium_GSE222322.rds
Size
726,803,825 bytes
SHA-256
eae66f079fad66ac3bed5d88465799c3c47e1a0aca12587725a2631653c5248a

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("Yadav2023_adult_human_spinal_cord_Visium_GSE222322.rds"). Allow sufficient memory for the object.

HumanDorsal root gangliaXenium

Human dorsal root ganglia · Xenium

Yu & Nagi et al., 2024 Nature Neuroscience

RDS2.94 GBGoogle sign-in required
File details & integrity
File
YuNagi2024_human_DRG_Xenium_GSE273557.rds
Size
2,936,935,983 bytes
SHA-256
6330a3ba7bd89499de0922f7596245d445980e413fa6725972c73f855f16e005

Checksum calculated from the source file during upload. Compare it after downloading the complete file.

Open in R with obj <- readRDS("YuNagi2024_human_DRG_Xenium_GSE273557.rds"). Allow sufficient memory for the object.

Maintained by Luca Massimino1 GB = 10⁹ bytes